A. Nigham and D. Hsu. Protein conformational flexibility analysis with noisy data. J. Computational Biology, 15(7):813–828, 2008.
R.-P. Berretty, D. Hsu, L. Kettner, A. Mascarenhas, M.R. Redinbo, and J. Snoeyink. Ligand binding to the pregnane X receptor by geometric matching of hydrogen bonding. In L. Florea and others, editors, Currents in Computational Molecular Biology, pp. 22–23, 2002. The booklet contains extended poster abstracts from RECOMB 2002.
M.S. Apaydin, D.L. Brutlag, C. Guestrin, D. Hsu, and J.C. Latombe. Stochastic conformational roadmaps for computing ensemble properties of molecular motion. In J.-D. Boissonnat and others, editors, Algorithmic Foundations of Robotics V—Proc. Workshop on the Algorithmic Foundations of Robotics (WAFR), pp. 131–148, Springer, 2002.